gatk3的最后一个经典版本3.8

Chris Hartl 74a17359a8 MathUtils.randomSubset() now uses Collections.shuffle() (indirectly, through the other methods ... that are tested), resulting in slightly different numbers of calls to the RNG, and ultimately different sets of selected variants. This commits updates the md5 values for the validation site selector integration test to reflect these new random subsets of variants that are selected.		2013-03-29 14:52:10 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	MathUtils.randomSubset() now uses Collections.shuffle() (indirectly, through the other methods	2013-03-29 14:52:10 -04:00
public	Upgrades and changes to LeftAlignVariants, motivated by 1000G consensus indel production:	2013-03-29 10:02:06 -04:00
settings	Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)	2013-03-12 10:57:14 -04:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Fix tests that were consistently or intermittently failing when run in parallel on the farm	2013-03-06 13:56:54 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00