Eric Banks 749c8bfbcd Moving more tools over to the new rod system		2011-08-10 13:42:35 -04:00
..
annotator	Missed a few 'variants'	2011-08-09 14:29:15 -04:00
beagle	Thanks to Mark for agreeing to transition from 'variants' back to 'variant'. I think I got them all but I've been jumping all around the code, so there might be a straggler or two.	2011-08-09 12:04:55 -04:00
coverage	Moving more tools over to the new rod system	2011-08-10 13:42:35 -04:00
diffengine	GATKReport v0.2:	2011-08-03 00:24:47 -04:00
fasta	More updates to be consistent with the new rod syntax.	2011-08-09 10:11:37 -04:00
filters	Thanks to Mark for agreeing to transition from 'variants' back to 'variant'. I think I got them all but I've been jumping all around the code, so there might be a straggler or two.	2011-08-09 12:04:55 -04:00
genotyper	Moving more tools over to the new rod system	2011-08-10 13:42:35 -04:00
indels	Moving more tools over to the new rod system	2011-08-10 13:42:35 -04:00
phasing	Moving more tools over to the new rod system	2011-08-10 13:42:35 -04:00
qc	Thanks to Mark for agreeing to transition from 'variants' back to 'variant'. I think I got them all but I've been jumping all around the code, so there might be a straggler or two.	2011-08-09 12:04:55 -04:00
recalibration	Reverting a bunch of bad -B type drops	2011-08-08 16:57:38 -04:00
validation	Continuing progress towards RodBinding 1.0	2011-08-03 17:19:28 -04:00
varianteval	Reverting a bunch of bad -B type drops	2011-08-08 16:57:38 -04:00
variantrecalibration	Updating VQSR for new RodBinding syntax. Cleaning up indel specific parts of VQSR.	2011-08-10 10:20:37 -04:00
variantutils	Thanks to Mark for agreeing to transition from 'variants' back to 'variant'. I think I got them all but I've been jumping all around the code, so there might be a straggler or two.	2011-08-09 12:04:55 -04:00
BAQIntegrationTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
ClipReadsWalkersIntegrationTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
PileupWalkerIntegrationTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
PrintReadsIntegrationTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
PrintReadsWalkerUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00