Khalid Shakir 7486696c07 When using bam list mode in HSP deriving VCF name from bam list instead of requiring an additional parameter. ... Creating a single temporary directory per ant test run instead of a putting temp files across all runs in the same directory. Updated various tests for above items and other small fixes.		2011-12-16 18:09:25 -05:00
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net/sf	Removed annoying FastaSequenceIndexBuilderProgressListener infrastructure that was just a boolean switch on whether to print progress or not.	2011-07-27 22:06:23 -04:00
org/broadinstitute/sting	When using bam list mode in HSP deriving VCF name from bam list instead of requiring an additional parameter.	2011-12-16 18:09:25 -05:00