Mauricio Carneiro 74344a3871 Bringing in the changes from the CMI repo		2012-12-13 21:59:37 -05:00
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src/org/broadinstitute/sting	Further related bug fixes to GGA mode in the HC: some variants (especially MNPs) were causing problems because they don't have to start at the current location to match the allele being genotyped. Fixed.	2012-12-12 14:53:02 -05:00
test/org/broadinstitute/sting	Bringing in the changes from the CMI repo	2012-12-13 21:59:37 -05:00