gatk3的最后一个经典版本3.8

David Roazen 742a7651e9 Further tweaking of test timeouts ... Increase one timeout, restore others that were only timing out due to the Java crypto lib bug to their original values. -DOUBLE timeout for NanoSchedulerUnitTest.testNanoSchedulerInLoop() -REDUCE timeout for EngineFeaturesIntegrationTest to its original value -REDUCE timeout for MaxRuntimeIntegrationTest to its original value -REDUCE timeout for GATKRunReportUnitTest to its original value		2013-03-15 14:49:21 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Fix for edge case bug of trying to create insertions/deletions on the edge of contigs.	2013-03-15 12:32:13 -04:00
public	Further tweaking of test timeouts	2013-03-15 14:49:21 -04:00
settings	Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)	2013-03-12 10:57:14 -04:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Fix tests that were consistently or intermittently failing when run in parallel on the farm	2013-03-06 13:56:54 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00