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Eric Banks 740b33acbb We were never validating the sequence dictionary of tabix indexed VCFs for some reason. Fixed. 
These changes happened in Tribble, but Joel clobbered them with his commit.
We can now change the logging priority on failures to validate the sequence dictionary to WARN.
Thanks to Tim F for indirectly pointing this out.
 		2014-02-05 10:12:38 -05:00
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c At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings. 2012-01-17 14:47:53 -05:00
chainFiles
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doc Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs) 2013-03-12 10:57:14 -04:00
external-example Bumped version to 2.8-SNAPSHOT, using new update_pom_versions.sh script. 2014-02-03 13:50:46 -05:00
gatk-framework We were never validating the sequence dictionary of tabix indexed VCFs for some reason. Fixed. 2014-02-05 10:12:38 -05:00
gatk-package Bumped version to 2.8-SNAPSHOT, using new update_pom_versions.sh script. 2014-02-03 13:50:46 -05:00
gatk-queue-extgen Bumped version to 2.8-SNAPSHOT, using new update_pom_versions.sh script. 2014-02-03 13:50:46 -05:00
gsalib Bumped version to 2.8-SNAPSHOT, using new update_pom_versions.sh script. 2014-02-03 13:50:46 -05:00
java/config Moved files to maven directories. 2014-02-03 13:50:44 -05:00
package-tests Distinct failsafe summary reports, just like invoker report directories. 2014-02-03 13:50:47 -05:00
perl Fixing the liftover script to not require strict VCF header validation. 2013-11-07 09:02:17 -05:00
queue-framework Bumped version to 2.8-SNAPSHOT, using new update_pom_versions.sh script. 2014-02-03 13:50:46 -05:00
queue-package Bumped version to 2.8-SNAPSHOT, using new update_pom_versions.sh script. 2014-02-03 13:50:46 -05:00
repo Rev Picard (public) to 1.107.1676 2014-02-04 22:04:28 -05:00
sting-root Rev Picard (public) to 1.107.1676 2014-02-04 22:04:28 -05:00
sting-utils Bumped version to 2.8-SNAPSHOT, using new update_pom_versions.sh script. 2014-02-03 13:50:46 -05:00
pom.xml Bumped version to 2.8-SNAPSHOT, using new update_pom_versions.sh script. 2014-02-03 13:50:46 -05:00