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gatk-3.8/java/src/org/broadinstitute/sting/gatk/io/stubs
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hanna d844d1c496 SAMFileWriters specified as command-line arguments were sometimes incorrectly altering the default short name. Make sure short name is not specified if shortName is not specified but fullName is. 
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1807 348d0f76-0448-11de-a6fe-93d51630548a
 		2009-10-09 19:16:46 +00:00
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OutputStreamArgumentTypeDescriptor.java General-purpose management of output streams. 2009-08-23 00:56:02 +00:00
OutputStreamStub.java Play nice with other jobs in this VM -- don't close stdout / stderr. 2009-09-17 18:55:08 +00:00
SAMFileReaderArgumentTypeDescriptor.java General-purpose management of output streams. 2009-08-23 00:56:02 +00:00
SAMFileWriterArgumentTypeDescriptor.java SAMFileWriters specified as command-line arguments were sometimes incorrectly altering the default short name. Make sure short name is not specified if shortName is not specified but fullName is. 2009-10-09 19:16:46 +00:00
SAMFileWriterStub.java General-purpose management of output streams. 2009-08-23 00:56:02 +00:00
Stub.java General-purpose management of output streams. 2009-08-23 00:56:02 +00:00