hanna a1e8a532ad Support for initialize() and onTraversalDone() output from parallelized walkers. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1911 348d0f76-0448-11de-a6fe-93d51630548a		2009-10-26 20:18:31 +00:00
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storage	Let Picard specify the default compression level.	2009-09-23 19:01:48 +00:00
stubs	SAMFileWriters specified as command-line arguments were sometimes incorrectly altering the default short name. Make sure short name is not specified if shortName is not specified but fullName is.	2009-10-09 19:16:46 +00:00
DirectOutputTracker.java	Output stream management fixes. I completely screwed up the output stream management system, but cleverly masked this fact by breaking some other stream management functionality that masked the problem.	2009-09-15 21:06:45 +00:00
OutputTracker.java	Better integrate the @ArgumentCollection into the command-line argument parser. Walkers can now specify their own @ArgumentCollections. Also cleaned up a bit of the CommandLineProgram template method pattern to minimize duplicate code.	2009-09-29 22:23:19 +00:00
ThreadLocalOutputTracker.java	Support for initialize() and onTraversalDone() output from parallelized walkers.	2009-10-26 20:18:31 +00:00