gatk-3.8/java
carneiro 73e43d8d2c Added functionality:
-disc (--discordance) parameter together with a ROD track will output a VCF with the variants in the ROD track that are not present in the 'variants' VCF. Useful tool to list the variants from hapmap (for example) that weren't called in a dataset.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5392 348d0f76-0448-11de-a6fe-93d51630548a
2011-03-07 19:18:15 +00:00
..
config Provide a default logger, some config settings, and some doc updates. 2009-04-29 02:06:05 +00:00
src Added functionality: 2011-03-07 19:18:15 +00:00
test Switched the CVUnitTest broken info from an Integer to a String since as of r5383 Integers are no longer broken when converted to Floats. 2011-03-07 16:33:14 +00:00