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gatk-3.8/java/test/org/broadinstitute/sting
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depristo af1bce3492 Longer wait time for threading test (5 min now) and an assertion to ensure that all jobs finished. Should probably just remove the longer running test so this becoming a non-issue 
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4999 348d0f76-0448-11de-a6fe-93d51630548a
 		2011-01-14 13:09:31 +00:00
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alignment Changing testing framework from junit -> testng, for its enhanced configurability. 2010-11-01 21:31:44 +00:00
commandline Fixed long-standing bug reported by Mauricio where @Arguments assigned to 2011-01-12 22:18:24 +00:00
datasources/pipeline Changing testing framework from junit -> testng, for its enhanced configurability. 2010-11-01 21:31:44 +00:00
gatk Reverting back to the old definition of QD because it works better with large numbers of samples. The new QD is relegated to a new annotation: sumGLbyD. Tweaks to the new HaplotypeScore based on evaluation with better QD calculation. The default qual threshold in GenerateVariantClusters is updated to be in line with the variant quality scores coming from the exact model. 2011-01-13 14:12:30 +00:00
jna Removed LibBat.SUB2_BSUB_BLOCK since the use of it exits the JVM. 2010-12-14 19:57:20 +00:00
oneoffprojects/walkers Changing testing framework from junit -> testng, for its enhanced configurability. 2010-11-01 21:31:44 +00:00
playground/gatk/walkers consolidating the checking of the RMD sequence dictionary against the reference into a single function, and adding an integration test to test that empty VCFs pass (both the indexing and the seq dictionary validation). 2010-11-30 00:01:56 +00:00
utils Longer wait time for threading test (5 min now) and an assertion to ensure that all jobs finished. Should probably just remove the longer running test so this becoming a non-issue 2011-01-14 13:09:31 +00:00
BaseTest.java Added the ability to test pipelines in dry or live mode via 'ant pipelinetest' and 'ant pipelinetest -Dpipeline.run=run'. 2010-11-22 22:59:42 +00:00
StingTextReporter.java Cleanup testng listener configuration. 2010-11-15 23:43:14 +00:00
WalkerTest.java Remove testWalkerUnitTest; it doesn't actually do anything and just adds 2011-01-13 19:02:00 +00:00