gatk3的最后一个经典版本3.8

Christopher Hartl 7381d5c243 Since this GRM now matches GCTA output for uncorrected intervals, implement and start proofing methods for LD-correction for genome partitioning. Very rudimentary tests just to solidify current position. ... Wish I could do this in the GATK, but it has to run on bed files natively. Phooey.		2012-10-10 01:59:13 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Added an argument to RR to allow polyploid consensus creation (by default it is turned off). This will eventually be replaced by the known SNPs track trigger.	2012-09-28 11:44:25 -04:00
public	Allow VCFs without PLs to be converted to a bed file with genotypes other than no-call (by setting the minimum GQ to <=0). Performance enhancements to GRM suite.	2012-10-03 21:36:35 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	a few more useful git ignores	2012-09-01 11:08:36 -04:00
build.xml	Proper error handling in NanoScheduler	2012-09-19 17:03:13 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00