gatk3的最后一个经典版本3.8

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Valentin Ruano-Rubio 736a857e82 Fixing CombineGVCFs that writes out the wrong REF allele Story: ===== - https://www.pivotaltracker.com/story/show/83259038 Changes: ======= - Done minimal changes to make the fix after an arduous attempt to understand CombineGVCFs code. Test: ==== - Added a integration test to explicitly test for the bug. - Updated a md5 changes as the bug was actually affecting one of the existing integration tests.		2014-12-13 22:38:24 -05:00
licensing	Updated license information	2014-10-14 17:10:12 -04:00
protected	Fixing CombineGVCFs that writes out the wrong REF allele	2014-12-13 22:38:24 -05:00
public	Updated gsalib version to 2.1 for resubmitting with updated license to CRAN	2014-12-09 17:07:48 -05:00
settings/helpTemplates	Output JSON version of docs for Galaxy	2014-10-09 06:42:25 -04:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Faster builds, with updates to documentation generation.	2014-11-05 00:32:23 +08:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/