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gatk-3.8/public/java/test/org/broadinstitute/sting/utils/variantcontext
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Mark DePristo 734756d6b2 Final fixes before BCF2 mark III push 
-- Added MLEAC and MLEAF format lines to PoolCallerWalker
-- VariantFiltrationWalker now throws an error when JEXL variables cannot be found (XXX < 0.5) but passes through (albeit with a disgusting warning) when a variable is found but its value is a bad type (AF < 0.5) where AF == [0.04,0.00] at multi-allelic variation
-- Allow values to pass assertEquals in VariantContextTestProvider when one file contains X=[null, null] and the other has X missing
 		2012-06-21 15:17:22 -04:00
..
writer Bugfixes for VCFWriterUnitTest and TestProvider to deal with stricter VCFWriter behavior 2012-06-21 15:16:26 -04:00
AlleleUnitTest.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
GenotypeLikelihoodsUnitTest.java Efficient Genotype object Intermediate commit 2012-06-14 16:42:24 -04:00
GenotypeUnitTest.java Cleanup Genotypes 2012-06-14 16:42:36 -04:00
GenotypesContextUnitTest.java Efficient Genotype object Intermediate commit 2012-06-14 16:42:24 -04:00
VCFJarClassLoadingUnitTest.java Don't try to share BCF2 yet 2012-05-24 10:57:06 -04:00
VariantContextBenchmark.java Cleanup Genotypes 2012-06-14 16:42:36 -04:00
VariantContextTestProvider.java Final fixes before BCF2 mark III push 2012-06-21 15:17:22 -04:00
VariantContextUnitTest.java Efficient Genotype object Intermediate commit 2012-06-14 16:42:24 -04:00
VariantContextUtilsUnitTest.java Finalizing new Genotype object and associated routines 2012-06-14 16:42:25 -04:00
VariantJEXLContextUnitTest.java Killing the final versions of old new VariantContext interface 2011-11-18 21:32:43 -05:00