Karthik Gururaj 733a84e4f9 Added support to transfer haplotypes once per region to the JNI ... Re-use transferred haplotypes (stored in GlobalRef) across calls to computeLikelihoods		2014-01-22 10:52:41 -08:00
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src/org/broadinstitute/sting	Added support to transfer haplotypes once per region to the JNI	2014-01-22 10:52:41 -08:00
test/org/broadinstitute/sting	Allow for additional input data to be used in the VQSR for clustering but don't carry it forward into the output VCF file.	2014-01-02 14:46:04 -05:00