Karthik Gururaj 733a84e4f9 Added support to transfer haplotypes once per region to the JNI ... Re-use transferred haplotypes (stored in GlobalRef) across calls to computeLikelihoods		2014-01-22 10:52:41 -08:00
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java	Added support to transfer haplotypes once per region to the JNI	2014-01-22 10:52:41 -08:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00