gatk3的最后一个经典版本3.8

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Karthik Gururaj 733a84e4f9 Added support to transfer haplotypes once per region to the JNI Re-use transferred haplotypes (stored in GlobalRef) across calls to computeLikelihoods		2014-01-22 10:52:41 -08:00
PairHMM_JNI	Added support to transfer haplotypes once per region to the JNI	2014-01-22 10:52:41 -08:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Added support to transfer haplotypes once per region to the JNI	2014-01-22 10:52:41 -08:00
public	Added support to transfer haplotypes once per region to the JNI	2014-01-22 10:52:41 -08:00
settings	Rev'ing the Variant jar to incorporate some patches to the BCF encoder that Menachem needs.	2014-01-02 23:33:17 -05:00
.gitignore	Added support for dynamic selection between AVX and un-vectorized C++,	2014-01-18 11:07:23 -08:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
build.xml	1. Added support for JNI integration for LoglessCaching PairHMM AVX	2014-01-15 11:07:09 -08:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Changing from scala 2.9.2 to 2.10.2.	2013-09-23 12:42:22 -04:00

The Genome Analysis Toolkit