carneiro c61dd2f09f data processing pipeline now has on the fly bam indexing (powered by Matt) some new parameters, Indel Cleaning with constrain movement and fixMates is gone. ... setting up methods development pipeline for some cosmetic changes. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5277 348d0f76-0448-11de-a6fe-93d51630548a		2011-02-18 23:13:54 +00:00
..
qscript	data processing pipeline now has on the fly bam indexing (powered by Matt) some new parameters, Indel Cleaning with constrain movement and fixMates is gone.	2011-02-18 23:13:54 +00:00
src/org/broadinstitute/sting	GSA-423 Better reporting for errors in QScript.script().	2011-02-18 22:21:15 +00:00
test/org/broadinstitute/sting/queue	Defaulting the MFCP to run without a tear script.	2011-02-17 21:13:14 +00:00