Phillip Dexheimer 6190d660e0 Edits to work with the latest htsjdk release: ... * TextCigarCodec.decode() is now static, and the getSingleton() method is gone * MergingSamRecordIterator now wants a Collection<SamReader> rather than Collection<SAMFileReader> in the constructor * SeekableBufferedStream now correctly reads the requested number of bytes, removed workaround in GATKBAMIndex		2015-01-13 21:32:10 -05:00
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main	Edits to work with the latest htsjdk release:	2015-01-13 21:32:10 -05:00
test	Edits to work with the latest htsjdk release:	2015-01-13 21:32:10 -05:00