zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity
gatk-3.8/protected/java/test/org/broadinstitute/sting/gatk/walkers
History
Eric Banks 481982202d Fixing the failing RR integration tests. 
* After consulting Tim/David/Mauricio we determined that the md5 changes were due to different encodings of binary arrays in samjdk
   * However, it made no functional difference to the results (confirmed by Eric) so we agreed to update md5s
 * Also, the header of one of the test bams was malformed but old picard jar didn't perform checks so it only started failing now
   * Fixed the bam
 		2013-02-06 12:40:56 -05:00
..
annotator Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
beagle Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
bqsr Added check that BaseRecalibrator is not being run on a reduced bam. 2013-02-06 10:14:27 -05:00
compression/reducereads Fixing the failing RR integration tests. 2013-02-06 12:40:56 -05:00
diagnostics Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
diffengine Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
fasta Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
filters Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
genotyper Replace org.broadinstitute.variant with jar built from the Picard repo 2013-02-05 17:24:25 -05:00
haplotypecaller Added some docs, unit test, and contracts to SimpleDeBruijnAssembler. 2013-02-04 15:17:22 -05:00
indels Update MD5s to reflect version number change in the BAM header 2013-02-01 13:51:31 -05:00
phasing Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
validation Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
varianteval Move some VCF/VariantContext methods back to the GATK based on feedback 2013-01-29 16:56:55 -05:00
variantrecalibration Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
variantutils Replace org.broadinstitute.variant with jar built from the Picard repo 2013-02-05 17:24:25 -05:00