Mauricio Carneiro 705cccaf63 Making SplitReads output FastQ's instead of BAM ... - eliminates one step in my pipeline - BAM is too finicky and maintaining parameters that wouldn't be useful was becoming a headache, better avoided.		2013-01-27 02:36:31 -05:00
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sting	Making SplitReads output FastQ's instead of BAM	2013-01-27 02:36:31 -05:00
variant	In cases where one uses VariantContextUtils.GenotypeMergeType.REQUIRE_UNIQUE we used to verify that the samples names are unique in VariantContextUtils.simpleMerge for each VCs. It couse to a bug that was reported on the forum (when a VCs had 2 VC from the same sample).	2013-01-25 15:49:51 -05:00