gatk3的最后一个经典版本3.8

Mark DePristo 72b2e77eed Linearize the findEndOfRegion algorithm in ActivityProfile, radically improving its performance ... -- Previous algorithm was O(N^2) -- #resolve GSA-723 https://jira.broadinstitute.org/browse/GSA-723		2013-01-27 14:10:06 -05:00
licensing	Refrain from pushing symlinks into the repo... not all filesystems treat it correctly	2013-01-22 15:18:19 -07:00
protected/java	HaplotypeCaller Optimization: return a inactive (p = 0.0) activity if the context has no bases in the pileup	2013-01-27 14:10:06 -05:00
public	Linearize the findEndOfRegion algorithm in ActivityProfile, radically improving its performance	2013-01-27 14:10:06 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Updating Queue maven version to 0.0.2	2013-01-10 13:46:49 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	ReadBackedPileup cleanup	2013-01-11 15:17:18 -05:00