depristo 721e8cb679 VariantsToTable now supports wildcard captures. -F PREFIX* now captures all fields that begin with PREFIX, output as a comma-separated list of unique values. Added integration test for VariantsToTable since I find it so useful. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4706 348d0f76-0448-11de-a6fe-93d51630548a		2010-11-18 18:54:59 +00:00
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alignment	Final step in error refactoring. GATK exception is now ReviewedStingException, indicating that this exception is really what one wants. Only use this exception when you have thought about StingException vs. UserException and made a real decision.	2010-09-12 15:07:38 +00:00
analyzecovariates	Updated PluginManager so that during testing Queue can dynamically compile and load separately multiple class directories into the same class loader.	2010-11-12 20:14:28 +00:00
commandline	Better docs, as requested by Matt	2010-11-15 18:24:15 +00:00
datasources/pipeline	Updated from SnakeYAML 1.6 to 1.7.	2010-09-22 19:47:49 +00:00
gatk	VariantsToTable now supports wildcard captures. -F PREFIX* now captures all fields that begin with PREFIX, output as a comma-separated list of unique values. Added integration test for VariantsToTable since I find it so useful.	2010-11-18 18:54:59 +00:00
oneoffprojects	Change the interface for RMDTrackBuilder, therefore always mandating the specification	2010-11-17 19:00:17 +00:00
playground	Initial checkin of the ValidationGenotyper. Not intended to be used by anybody yet. Only here for archival purposes at this point.	2010-11-15 22:33:49 +00:00
queue	Change the interface for RMDTrackBuilder, therefore always mandating the specification	2010-11-17 19:00:17 +00:00
utils	Minor JAVA visibility updates	2010-11-16 15:28:58 +00:00