Khalid Shakir 7486696c07 When using bam list mode in HSP deriving VCF name from bam list instead of requiring an additional parameter. ... Creating a single temporary directory per ant test run instead of a putting temp files across all runs in the same directory. Updated various tests for above items and other small fixes.		2011-12-16 18:09:25 -05:00
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examples	When using bam list mode in HSP deriving VCF name from bam list instead of requiring an additional parameter.	2011-12-16 18:09:25 -05:00
lib	moving the example scala scripts to the qscripts package.	2011-07-01 16:14:59 -04:00
DataProcessingPipeline.scala	Added test mode to DPP	2011-12-12 18:29:06 -05:00
GATKResourcesBundle.scala	Queue now properly escapes all shell arguments in generated shell scripts	2011-12-01 18:13:44 -05:00
MethodsDevelopmentCallingPipeline.scala	Queue now properly escapes all shell arguments in generated shell scripts	2011-12-01 18:13:44 -05:00
PacbioProcessingPipeline.scala	Added test mode to PPP	2011-12-12 18:29:06 -05:00