gatk-3.8/PairHMM_JNI/pairhmm-1-base.cc

76 lines
1.7 KiB
C++

//#define DEBUG 1
//#define DEBUG0_1 1
//#define DEBUG3 1
#include "headers.h"
#include "template.h"
#include "utils.h"
using namespace std;
class LoadTimeInitializer
{
public:
LoadTimeInitializer() //will be called when library is loaded
{
ConvertChar::init();
}
};
LoadTimeInitializer g_load_time_initializer;
#define BATCH_SIZE 10000
#define RUN_HYBRID
int main(int argc, char** argv)
{
if(argc < 2)
{
cerr << "Needs path to input file as argument\n";
exit(0);
}
bool use_old_read_testcase = false;
if(argc >= 3 && string(argv[2]) == "1")
use_old_read_testcase = true;
initialize_function_pointers();
std::ifstream ifptr;
FILE* fptr = 0;
if(use_old_read_testcase)
{
fptr = fopen(argv[1],"r");
assert(fptr);
}
else
{
ifptr.open(argv[1]);
assert(ifptr.is_open());
}
testcase tc;
while(1)
{
int break_value = use_old_read_testcase ? read_testcase(&tc, fptr) : read_mod_testcase(ifptr,&tc,true);
if(break_value < 0)
break;
float result_avxf = g_compute_full_prob_float(&tc, 0);
double result = 0;
if (result_avxf < MIN_ACCEPTED) {
double result_avxd = g_compute_full_prob_double(&tc, 0);
result = log10(result_avxd) - log10(ldexp(1.0, 1020.0));
}
else
result = (double)(log10f(result_avxf) - log10f(ldexpf(1.f, 120.f)));
double baseline_result = compute_full_prob<double>(&tc);
baseline_result = log10(baseline_result) - log10(ldexp(1.0, 1020.0));
cout << std::scientific << baseline_result << " "<<result<<"\n";
delete tc.rs;
delete tc.hap;
}
if(use_old_read_testcase)
fclose(fptr);
else
ifptr.close();
return 0;
}