gatk3的最后一个经典版本3.8

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Eric Banks 7174f8cfeb IndelRealigner throws a user error when it encounters reads with I operators greater than the number of read bases. Added test to ensure it works.		2014-04-03 18:16:24 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	IndelRealigner throws a user error when it encounters reads with I operators greater than the number of read bases.	2014-04-03 18:16:24 -04:00
public	Slightly modifying the way to use the IUPAC ambiguity codes in the FastaAlternateReferenceMaker.	2014-04-02 21:34:25 -04:00
settings/helpTemplates	Replaced local drmaa and Jama artifacts with versions from maven central.	2014-02-22 01:21:35 +08:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Rename existing PipelineTests to QueueTests to prepare for upcoming push of new pipeline tests	2014-03-10 21:24:03 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Update pom versions to mark the start of GATK 3.2 development	2014-03-18 01:18:59 -04:00

The Genome Analysis Toolkit