29 lines
766 B
Java
Executable File
29 lines
766 B
Java
Executable File
package edu.mit.broad.sting.atk;
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import net.sf.samtools.SAMRecord;
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import edu.mit.broad.sting.atk.LocusContext;
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/**
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* Created by IntelliJ IDEA.
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* User: mdepristo
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* Date: Feb 22, 2009
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* Time: 2:52:28 PM
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* To change this template use File | Settings | File Templates.
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*/
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public interface ReadWalker<MapType, ReduceType> {
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void initialize();
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public String walkerType();
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// Do we actually want to operate on the context?
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boolean filter(LocusContext context, SAMRecord read);
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// Map over the edu.mit.broad.sting.atk.LocusContext
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MapType map(LocusContext context, SAMRecord read);
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// Given result of map function
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ReduceType reduceInit();
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ReduceType reduce(MapType value, ReduceType sum);
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void onTraveralDone();
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}
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