gatk3的最后一个经典版本3.8

Mark DePristo 7105ad65a6 Remove the capability of EventMap to emit symbolic alleles for unassembled events ... -- These events always occur on the very edge of the haplotypes, and are intrinsically dodgy. So instead of emitting them and then potentially having to deal with merging real basepair events into them we just no longer emit those events.		2013-04-08 12:47:48 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	LD-based merging algorithm for nearby events in the haplotypes	2013-04-08 12:47:48 -04:00
public	Remove the capability of EventMap to emit symbolic alleles for unassembled events	2013-04-08 12:47:48 -04:00
settings	Don't allow users to specify keys and IDs that contain angle brackets or equals signs (not allowed in VCF spec).	2013-04-05 00:52:32 -04:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Disable Contracts for Java for tests	2013-04-04 11:56:17 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00