gatk3的最后一个经典版本3.8

Eric Banks 70f3997a38 More RR tests and fixes. ... * Fixed implementation of polyploid (het) compression in RR. * The test for a usable site was all wrong. Worked out details with Mauricio to get it right. * Added comprehensive unit tests in HeaderElement class to make sure this is done right. * Still need to add tests for the actual polyploid compression. * No longer allow non-diploid het compression; I don't want to test/handle it, do you? * Added nearly full coverage of tests for the BaseCounts class.		2013-02-04 15:55:15 -05:00
licensing	Refrain from pushing symlinks into the repo... not all filesystems treat it correctly	2013-01-22 15:18:19 -07:00
protected/java	More RR tests and fixes.	2013-02-04 15:55:15 -05:00
public	Resolves Genome Sequence Analysis GSA-750 Don't print an endless series of starting messages from the ProgressMeter	2013-02-04 15:47:30 -05:00
settings	Rev picard, sam-jdk, and tribble	2013-02-01 13:51:30 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Move AWS keys to a resources subdirectory within the phonehome package	2013-01-31 11:56:34 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	ReadBackedPileup cleanup	2013-01-11 15:17:18 -05:00