gatk-3.8/protected/gatk-protected
Valentin Ruano-Rubio 463af7143f Activate reverse allele trimming in GVCF
Story:

https://www.pivotaltracker.com/s/projects/1007536

Changes:

1. HC's GenotypingEngine now invokes reverseAlleleTrimming on GVCF variant output lines.
2. GenotypeGVCFs also reverse trim after regenotyping as some alt. alleles are dropped (observed in real-data).
2014-02-20 03:17:24 -05:00
..
src Activate reverse allele trimming in GVCF 2014-02-20 03:17:24 -05:00
pom.xml Add ability to run *KnowledgeBaseTests to maven 2014-02-11 14:08:24 -05:00