David Roazen 0e65296efb Rev picard, sam-jdk, tribble, and variant jars to 1.104.1628 ... -update VariantFiltration to work with new Lazy wrapper around the JexlEngine in VariantContextUtils		2013-12-05 12:45:32 -05:00
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R	Something changed with the ggtitle syntax in the latest version of ggplot2.	2013-08-14 14:40:03 -04:00
c	At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings.	2012-01-17 14:47:53 -05:00
chainFiles	…
doc	Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)	2013-03-12 10:57:14 -04:00
java	Rev picard, sam-jdk, tribble, and variant jars to 1.104.1628	2013-12-05 12:45:32 -05:00
keys	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
packages	ValidatingPileup was renamed to CheckPileup	2013-02-15 11:56:19 -05:00
perl	Fixing the liftover script to not require strict VCF header validation.	2013-11-07 09:02:17 -05:00
scala	New VCF engine arguments to specify an alternate IndexCreator	2013-12-03 13:31:02 -05:00
testdata	Walker to create a fastq file from an interval list	2013-06-29 11:24:16 -04:00