gatk-3.8/scala
kshakir acc2f1c9fe Updated FCPTest to use the new path to fullCallingPipeline.q changed in r5017.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5027 348d0f76-0448-11de-a6fe-93d51630548a
2011-01-19 21:43:43 +00:00
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qscript Incorporates tearsheet and plot production with database access into standard pipeline. Note that the following dotkit packages must be run before the adpr will be correctly generated: 2011-01-19 20:48:42 +00:00
src/org/broadinstitute/sting VQSR now only uses the valid polymorphic sites for training and truth sensitivity calculations. Any number of tracks whose ROD binding begins with the name truth can be used as truth sensitivity tracks. 2011-01-18 20:48:19 +00:00
test/org/broadinstitute/sting/queue Updated FCPTest to use the new path to fullCallingPipeline.q changed in r5017. 2011-01-19 21:43:43 +00:00