chartl 706d49d84c Commit for Aaron ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2932 348d0f76-0448-11de-a6fe-93d51630548a		2010-03-04 21:29:07 +00:00
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alignment	oops - didn't mean to check this in	2010-03-02 20:28:22 +00:00
gatk	Various improvements to plink, variant context, and VCF code.	2010-03-04 17:58:01 +00:00
oneoffprojects/walkers	Commit for Aaron	2010-03-04 21:29:07 +00:00
playground/gatk/walkers	1. To make indel calls, we need to get rid of the SNP-centricity of our code. First step is to have the reference be a String, not a char in the Genotype. Note that this is just a temporary patch until the genotype code is ported over to use VariantContext.	2010-03-02 20:26:40 +00:00
utils	Update to VCF code to get it up to spec.	2010-03-03 06:12:42 +00:00
BaseTest.java	added root GATKData variable	2010-02-12 15:25:34 +00:00
TrivialInstrumenter.java	fixed a bunch of comments and license headers.	2009-06-10 14:10:46 +00:00
WalkerTest.java	forgot to uncomment the auto-deletion of temp files...	2010-03-04 20:29:42 +00:00