Mauricio Carneiro 70335b2b0a Hard clipping soft clipped reads to fix misalignments. ... Pre-softclipped reads (with high qual) are a complicated event to deal with in the Reduced Reads environment. I chose to hard clip them out for now and added a todo item to bring them back on in the future, perhaps as a variant region.		2011-09-21 17:12:01 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Hard clipping soft clipped reads to fix misalignments.	2011-09-21 17:12:01 -04:00
test	Merged bug fix from Stable into Unstable	2011-09-20 17:24:14 -04:00