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datasources
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Implement ActiveRegionTraversal RefMetaDataTracker for map call; HaplotypeCaller now annotates ID from dbSNP
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2013-06-10 16:20:31 -04:00 |
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downsampling
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Exclude reduced reads from elimination during downsampling
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2013-06-11 16:16:26 -04:00 |
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executive
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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filters
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This commit addresses JIRA issue GSA-948: Prevent users from doing the wrong thing with RNA-Seq data and the GATK.
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2013-06-10 10:44:42 -04:00 |
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iterators
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SAMDataSource: always consolidate cigar strings into canonical form
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2013-06-19 13:29:01 -04:00 |
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refdata
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Detect stuck lock-acquisition calls, and disable file locking for tests
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2013-04-24 22:49:02 -04:00 |
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report
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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samples
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Trivial update to ceutrio.ped file to make it really the CEU trio sample names
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2013-05-14 17:08:13 -04:00 |
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traversals
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Exclude reduced reads from elimination during downsampling
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2013-06-11 16:16:26 -04:00 |
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walkers
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SAMDataSource: always consolidate cigar strings into canonical form
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2013-06-19 13:29:01 -04:00 |
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CommandLineGATKUnitTest.java
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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EngineFeaturesIntegrationTest.java
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Fix public / protected dependency
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2013-06-19 19:42:09 -04:00 |
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GenomeAnalysisEngineUnitTest.java
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Added the functionality to impose a relative ordering on ReadTransformers in the GATK engine.
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2013-03-06 12:38:59 -05:00 |
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MaxRuntimeIntegrationTest.java
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Subshard timeouts in the GATK
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2013-05-15 07:00:39 -04:00 |
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ReadMetricsUnitTest.java
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Implement ActiveRegionTraversal RefMetaDataTracker for map call; HaplotypeCaller now annotates ID from dbSNP
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2013-06-10 16:20:31 -04:00 |
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WalkerManagerUnitTest.java
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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