Chris Hartl 6ff74deac7 Add overall genotype concordance to the genotype concordance tool. In addition, protect from non-diploid genotypes, which can cause very strange behavior. ... Update MD5 sums. As expected, md5 changes are consistent with the genotype concordance field being added to each output.		2013-05-06 13:06:30 -04:00
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src/org/broadinstitute/sting	leftAlignCigarSequentially now supports haplotypes with insertions and deletions where the deletion allele was previously removed by the leftAlignSingleIndel during it's cleanup phase.	2013-05-03 09:32:05 -04:00
test/org/broadinstitute/sting	Add overall genotype concordance to the genotype concordance tool. In addition, protect from non-diploid genotypes, which can cause very strange behavior.	2013-05-06 13:06:30 -04:00