depristo 6fe1c337ff Pileup cleanup; pooled caller v1 ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2070 348d0f76-0448-11de-a6fe-93d51630548a		2009-11-18 17:03:48 +00:00
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gatk	Pileup cleanup; pooled caller v1	2009-11-18 17:03:48 +00:00
playground/gatk/walkers	Added - a walker that outputs relevant information about false negatives given a bunch of hapmap individuals and corresponding integration tests for it.	2009-11-18 15:47:52 +00:00
utils	a convenience method to join a map into a single string, which I need for some VCF work. Added some documentation to the join method as well.	2009-11-17 16:50:01 +00:00
BaseTest.java	Added some code to change the instrumentation for tests.	2009-05-20 05:15:27 +00:00
TrivialInstrumenter.java	fixed a bunch of comments and license headers.	2009-06-10 14:10:46 +00:00
WalkerTest.java	Enabling correct high-performance ROD walker and moved VariantEval over to it. Performance improvements in variantEval in general. See wiki for full description	2009-10-20 23:31:13 +00:00