gatk3的最后一个经典版本3.8

hanna 6fdd622160 Describe how GATK finds walkers. Change the example to avoid copying the class file into the walkers directory. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@104 348d0f76-0448-11de-a6fe-93d51630548a		2009-03-19 22:41:12 +00:00
core/java/src/org/broadinstitute/sting	Configure the plugin directory.	2009-03-19 22:12:25 +00:00
doc	Describe how GATK finds walkers. Change the example to avoid copying the class file into the walkers directory.	2009-03-19 22:41:12 +00:00
playground	Restructured AlleleFrequency classes into 3 classes: AlleleFrequencyWalker, AlleleFrequencyMetricsWalker, AlleleFrequencyEstimate. AlleleFrequencyMetricsWalker class now calls mapper function of AlleleFrequencyWalker and works with the result. AlleleFrequencyEstimate is now a separate class instead of a subclass of AlleleFrequencyWalker.	2009-03-19 22:06:01 +00:00
settings	Moved build.xml, ivy.xml and settings to root of Sting repository.	2009-03-18 19:13:19 +00:00
testdata	Skeleton of new directory structure.	2009-03-11 20:05:05 +00:00
build.xml	Move the basic gatk framework into the core subtree.	2009-03-18 23:39:00 +00:00
ivy.xml	Added dependences on two libraries: the Colt package, which is a collection of high performance computing libraries from CERN; and Log4j, which will be our new logging platform.	2009-03-19 16:16:31 +00:00