Mauricio Carneiro 6f9264d2b3 Hard Clipping no longer leaves indels on the tails ... The clipper could leave an insertion or deletion as the start or end of a read after hardclipping a read if the element adjacent to the clipping point was an indel. Fixed.		2011-08-30 02:44:58 -04:00
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R	GATKReport v0.2:	2011-08-03 00:24:47 -04:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	Hard Clipping no longer leaves indels on the tails	2011-08-30 02:44:58 -04:00
packages	Added edu.mit.broad.picard to Queue packaged jar.	2011-07-23 14:40:29 -04:00
perl	Moving these supported perl scripts to public	2011-07-01 17:26:25 -04:00
scala	Creating sample-bam list instead of joining	2011-08-22 18:03:39 -04:00
testdata	GZIP VCF for testing	2011-08-19 09:05:39 -04:00