gatk3的最后一个经典版本3.8

Mark DePristo 6f26c07b85 Removed the SpecificDifference class. Now Difference classes always have the option to remember specific master and test values. This means that all summarized differences carry with them specific examples of their differences. Consequently, now even summarized differences give at least one example of the specific difference, even when the count of the difference is > 1. Unit tests updated. Added DiffObjects integrationtest. VCFDiffableReader now specifically reads the first line of the VCF file to capture the version number.		2011-07-18 10:42:35 -04:00
public	Removed the SpecificDifference class. Now Difference classes always have the option to remember specific master and test values. This means that all summarized differences carry with them specific examples of their differences. Consequently, now even summarized differences give at least one example of the specific difference, even when the count of the difference is > 1. Unit tests updated. Added DiffObjects integrationtest. VCFDiffableReader now specifically reads the first line of the VCF file to capture the version number.	2011-07-18 10:42:35 -04:00
settings	Oops, need this	2011-07-17 13:08:08 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Merged bug fix from Stable into Unstable	2011-07-15 19:38:20 -04:00
ivy.xml	Merged bug fix from Stable into Unstable, and resolved merge conflicts.	2011-07-08 15:50:31 -04:00