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David Roazen 6f12c8b0dc Exclude all transitive dependencies in maven package-tests 
This change should allow us to test that the GATK jar has been
correctly packaged at release time, by ensuring that only the
packaged jar + a few test-related dependencies are on the classpath
when tests are run.

Note that we still need to actually test that this works as intended
before we can make this live in the Bamboo release plan.
 		2014-02-12 14:59:05 -05:00
..
c At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings. 2012-01-17 14:47:53 -05:00
chainFiles
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doc Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs) 2013-03-12 10:57:14 -04:00
external-example Added a set of serial tests to gatk/queue packages, which runs all tests under their package in one TestNG execution. 2014-02-06 08:25:38 -05:00
gatk-framework Add ability to run *KnowledgeBaseTests to maven 2014-02-11 14:08:24 -05:00
gatk-package Add ability to run *KnowledgeBaseTests to maven 2014-02-11 14:08:24 -05:00
gatk-queue-extgen Bumped version to 2.8-SNAPSHOT, using new update_pom_versions.sh script. 2014-02-03 13:50:46 -05:00
gsalib Added a set of serial tests to gatk/queue packages, which runs all tests under their package in one TestNG execution. 2014-02-06 08:25:38 -05:00
java/config Moved files to maven directories. 2014-02-03 13:50:44 -05:00
package-tests Exclude all transitive dependencies in maven package-tests 2014-02-12 14:59:05 -05:00
perl Fixing the liftover script to not require strict VCF header validation. 2013-11-07 09:02:17 -05:00
queue-framework Add ability to run *KnowledgeBaseTests to maven 2014-02-11 14:08:24 -05:00
queue-package Add ability to run *KnowledgeBaseTests to maven 2014-02-11 14:08:24 -05:00
repo Removed use of picard private. 2014-02-09 17:08:52 +08:00
sting-root Add ability to run *KnowledgeBaseTests to maven 2014-02-11 14:08:24 -05:00
sting-utils Added a set of serial tests to gatk/queue packages, which runs all tests under their package in one TestNG execution. 2014-02-06 08:25:38 -05:00
pom.xml Bumped version to 2.8-SNAPSHOT, using new update_pom_versions.sh script. 2014-02-03 13:50:46 -05:00