Eric Banks 72e2d569c5 The user can now set the maximum allowable cycle on the command-line with --maximum_cycle_value. This value is (now) enforced in the Cycle covariate and a User Error is thrown if the maximum value is passed (with a helpful error message). Added unit tests to cover this new functionality.		2012-11-20 22:41:57 -05:00
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ContextCovariateUnitTest.java	Cleanup BQSR classes	2012-07-31 08:11:03 -04:00
CycleCovariateUnitTest.java	The user can now set the maximum allowable cycle on the command-line with --maximum_cycle_value. This value is (now) enforced in the Cycle covariate and a User Error is thrown if the maximum value is passed (with a helpful error message). Added unit tests to cover this new functionality.	2012-11-20 22:41:57 -05:00
QualQuantizerUnitTest.java	Ready for full-scale evaluation adaptive BQSR contexts	2012-08-03 16:02:53 -04:00
ReadCovariatesUnitTest.java	Cleanup BQSR classes	2012-07-31 08:11:03 -04:00
ReadGroupCovariateUnitTest.java	Cleanup BQSR classes	2012-07-31 08:11:03 -04:00
RecalDatumUnitTest.java	RecalDatums now hold doubles so the test for equality needs an epsilon.	2012-08-28 16:00:52 -04:00
RecalibrationReportUnitTest.java	Bad news folks: BQSR scatter-gather was totally busted; you absolutely cannot trust any BQSR table that was a product of SG (for any version of BQSR). I fixed BQSR-gathering, rewrote (and enabled) the unit test, and confirmed that outputs are now identical whether or not SG is used to create the table.	2012-09-20 14:14:34 -04:00