Guillermo del Angel 6ec686b877 Complement to previous commit: make sure we also don't inherit filter from input VCF when genotyping at an empty site		2012-02-06 13:19:26 -05:00
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R	Protect ourselves when iteration is present but there's only a single iteration in queueJobReport.R	2011-12-19 10:08:38 -05:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	…
doc	…
java	Complement to previous commit: make sure we also don't inherit filter from input VCF when genotyping at an empty site	2012-02-06 13:19:26 -05:00
packages	Revved Picard to incorporate tfennell's AsyncSAMFileWriter.	2011-12-06 10:37:42 -05:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	Be explicit about setting the snpEff -onlyCoding option in the pipeline	2012-01-17 20:04:27 -05:00
testdata	Data Processing Pipeline Test	2011-12-12 00:24:51 -05:00