David Roazen 6ec1e613a2 Move AWS keys to a resources subdirectory within the phonehome package ... Resources must be in a subdirectory called "resources" in the package hierarchy to be picked up by the packaging system. Adding each resource manually to the jars in build.xml does not cause the resource to be added to the standalone GATK jar when we package the GATK, so it's best to always use this convention.		2013-01-31 11:56:34 -05:00
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R	Fix a nasty bug in reading GATK reports with a single line	2012-09-10 20:14:13 -04:00
c	At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings.	2012-01-17 14:47:53 -05:00
chainFiles	…
doc	…
java	Move AWS keys to a resources subdirectory within the phonehome package	2013-01-31 11:56:34 -05:00
keys	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
packages	Remove the ability to package GATK/Queue Lite from the build system	2013-01-28 02:42:37 -05:00
perl	Split out contig names from Reference .fai file on white space (to support the GATK resource bundle's file human_g1k_v37.fasta.fai.gz, which does not use tab delimiters)	2012-06-07 16:56:32 -04:00
scala	Making metrics a required parameter in MarkDuplicates	2013-01-25 17:49:49 -05:00
testdata	Reverting move of BQSR tests to public, as per DR's email	2012-07-19 10:02:05 -04:00