gatk3的最后一个经典版本3.8

David Roazen 6ec1e613a2 Move AWS keys to a resources subdirectory within the phonehome package ... Resources must be in a subdirectory called "resources" in the package hierarchy to be picked up by the packaging system. Adding each resource manually to the jars in build.xml does not cause the resource to be added to the standalone GATK jar when we package the GATK, so it's best to always use this convention.		2013-01-31 11:56:34 -05:00
licensing	Refrain from pushing symlinks into the repo... not all filesystems treat it correctly	2013-01-22 15:18:19 -07:00
protected/java	Intermediate commit of new bubble assembly graph traversal algorithm for the HaplotypeCaller. Adding functionality for a path from an assembly graph to calculate its own cigar string from each of the bubbles instead of doing a massive Smith-Waterman alignment between the path's full base composition and the reference.	2013-01-31 11:32:19 -05:00
public	Move AWS keys to a resources subdirectory within the phonehome package	2013-01-31 11:56:34 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Move AWS keys to a resources subdirectory within the phonehome package	2013-01-31 11:56:34 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	ReadBackedPileup cleanup	2013-01-11 15:17:18 -05:00