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gatk-3.8/public/java/test/org/broadinstitute/sting/gatk/downsampling
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Eric Banks ba2c3b57ed Extended the allele-biased down-sampling functionality to handle reduced reads. 
Note that this works only in the case of pileups (i.e. coming from UG);
allele-biased down-sampling for RR just cannot work for haplotypes.

Added lots of unit tests for new functionality.
 		2013-04-26 11:23:17 -04:00
..
AlleleBiasedDownsamplingUtilsUnitTest.java Extended the allele-biased down-sampling functionality to handle reduced reads. 2013-04-26 11:23:17 -04:00
DownsamplingReadsIteratorUnitTest.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
FractionalDownsamplerUnitTest.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
LevelingDownsamplerUnitTest.java Add size() method to Downsampler interface 2013-04-08 15:48:13 -04:00
PerSampleDownsamplingReadsIteratorUnitTest.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
PositionallyDownsampledArtificialSingleSampleReadStreamAnalyzer.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
ReservoirDownsamplerUnitTest.java Add size() method to Downsampler interface 2013-04-08 15:48:13 -04:00
SimplePositionalDownsamplerUnitTest.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00