gatk3的最后一个经典版本3.8

Mauricio Carneiro 6e6f0f10e1 BaseQualityScoreRecalibration walker (bqsr v2) first commit includes ... * Adding the context covariate standard in both modes (including old CountCovariates) with parameters * Updating all covariates and modules to use GATKSAMRecord throughout the code. * BQSR now processes indels in the pileup (but doesn't do anything with them yet)		2012-02-06 17:38:29 -05:00
public	BaseQualityScoreRecalibration walker (bqsr v2) first commit includes	2012-02-06 17:38:29 -05:00
settings	Rev. tribble to fix BED codec bug in tribble 51	2012-01-17 16:40:26 -05:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Merged bug fix from Stable into Unstable	2012-01-24 15:19:29 -05:00
ivy.xml	S3 upload now directly creates the XML report in memory and puts that in S3	2012-01-29 15:14:58 -05:00