hanna 6e60cddfed A fix for the 'rod blows up when it hits a GenomeLoc outside the reference' issu ... e. Really a stopgap; error handling in the RODs needs to be addressed in a more comprehensive way. Right now, hasNext() isn't guaranteed to be correct. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@878 348d0f76-0448-11de-a6fe-93d51630548a		2009-06-02 18:14:46 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	A fix for the 'rod blows up when it hits a GenomeLoc outside the reference' issu	2009-06-02 18:14:46 +00:00
test/org/broadinstitute/sting	added some more documentation to the GLF writer and it's supporting classes, and some other fixes	2009-06-02 14:53:58 +00:00