kiran 6e389059cf An improved version of VariantSubset and VariantSelect, meant to replace those walkers. Takes in a VCF and creates a subsetted VCF by sample(s), JEXL expressions, or both. ... When subsetting by sample, the -SN argument is treated as a literal sample name and, if no match is found, as a regular expression. This allows for a large number of samples to be selected at once (useful when, for instance, cases are given one sample name prefix and controls are given another). After the subsetting procedure, the INFO-field annotations AC, AN, AF, and DP are all recalculated to properly reflect the new contents of the VCF. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3968 348d0f76-0448-11de-a6fe-93d51630548a		2010-08-08 02:57:06 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	An improved version of VariantSubset and VariantSelect, meant to replace those walkers. Takes in a VCF and creates a subsetted VCF by sample(s), JEXL expressions, or both.	2010-08-08 02:57:06 +00:00
test	Re-enabling this test	2010-08-06 20:20:37 +00:00