Valentin Ruano-Rubio 1f8282633b Removed plots generation from the BaseRecalibration software ... Improved AnalyzeCovariates (AC) integration test. Renamed AC test files ending with .grp to .table Implementation: * Removed RECAL_PDF/CSV_FILE from RecalibrationArgumentCollection (RAC). Updated rest of the code accordingly. * Fixed BQSRIntegrationTest to work with new changes		2013-06-19 14:47:56 -04:00
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gatk/walkers/variantrecalibration	Updating VQSR docs. Removing references to old best practices pages.	2012-08-01 14:30:24 -04:00
queue/util	Improve queue script jobreport visualization script	2013-05-07 12:11:46 -04:00
utils/recalibration	Removed plots generation from the BaseRecalibration software	2013-06-19 14:47:56 -04:00