ebanks 084337087e Removing deprecated code and walkers for which I had the green light from repository. ... Moved piecemealannotator and secondarybases to archive. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2195 348d0f76-0448-11de-a6fe-93d51630548a		2009-12-01 05:58:20 +00:00
..
piecemealannotator	Removing deprecated code and walkers for which I had the green light from repository.	2009-12-01 05:58:20 +00:00
AbstractFirecrestFileParser.java	Removing deprecated code and walkers for which I had the green light from repository.	2009-12-01 05:58:20 +00:00
AddFourProbsToSAM.java	Removing deprecated code and walkers for which I had the green light from repository.	2009-12-01 05:58:20 +00:00
AnnotateSecondaryBase.java	Removing deprecated code and walkers for which I had the green light from repository.	2009-12-01 05:58:20 +00:00
BasecallingBaseModel.java	Removing deprecated code and walkers for which I had the green light from repository.	2009-12-01 05:58:20 +00:00
BasecallingReadModel.java	Removing deprecated code and walkers for which I had the green light from repository.	2009-12-01 05:58:20 +00:00
BasecallingStats.java	Removing deprecated code and walkers for which I had the green light from repository.	2009-12-01 05:58:20 +00:00
BasecallingTrainer.java	Removing deprecated code and walkers for which I had the green light from repository.	2009-12-01 05:58:20 +00:00
CombineSamAndFourProbs.java	Removing deprecated code and walkers for which I had the green light from repository.	2009-12-01 05:58:20 +00:00
FirecrestFileParser.java	Removing deprecated code and walkers for which I had the green light from repository.	2009-12-01 05:58:20 +00:00
FirecrestFilenameComparator.java	Removing deprecated code and walkers for which I had the green light from repository.	2009-12-01 05:58:20 +00:00
FirecrestReadData.java	Removing deprecated code and walkers for which I had the green light from repository.	2009-12-01 05:58:20 +00:00
FourIntensity.java	Removing deprecated code and walkers for which I had the green light from repository.	2009-12-01 05:58:20 +00:00
FourProb.java	Removing deprecated code and walkers for which I had the green light from repository.	2009-12-01 05:58:20 +00:00
FourProbRead.java	Removing deprecated code and walkers for which I had the green light from repository.	2009-12-01 05:58:20 +00:00
IlluminaParser.java	Removing deprecated code and walkers for which I had the green light from repository.	2009-12-01 05:58:20 +00:00
MatchSQTagToStrand.java	Removing deprecated code and walkers for which I had the green light from repository.	2009-12-01 05:58:20 +00:00
RawRead.java	Removing deprecated code and walkers for which I had the green light from repository.	2009-12-01 05:58:20 +00:00
SecondaryBaseAnnotator.java	Removing deprecated code and walkers for which I had the green light from repository.	2009-12-01 05:58:20 +00:00